1
Upload your MS file(s) and database(s)
MS Files
Select RAW, mzML, or MGF files to analyze. MGF files must contain only MS2 spectra.
Databases
Select a database in FASTA format.
2
Set your parameters
Select your PTMs (Post-Translational Modifications)
Fragmentation
MS2 Analyzer
Enzyme
"Auto" will analyze your spectral patterns to detect the digestion enzyme. AspN, Chymotrypsin, Elastase, LysC, Pepsin and Trypsin are currently supported.
Da
ppm
Da
ppm
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